The Specimen Data Refinery: A Canonical Workflow Framework and FAIR Digital Object Approach to Speeding up Digital Mobilisation of Natural History Collections

By |April 1, 2022|Categories: Publications|

A key limiting factor in organising and using information from [...]

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BioExcel Whitepaper on Scientific Software Development (BioExcel-2 update)

By |March 31, 2022|Categories: Publications|Tags: |

This white paper presents the experience of the developers and recommendations for development of high-quality software engineering processes.

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GROMACS in the Cloud: A Global Supercomputer to Speed Up Alchemical Drug Design

By |March 30, 2022|Categories: Publications|Tags: , |

We assess costs and efficiency of state-of-the-art high-performance cloud computing [...]

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Ten Simple Rules for making a software tool workflow-ready

By |March 24, 2022|Categories: Publications|Tags: , , |

There is little specific guidance for writing software intended to slot in as a tool within a workflow; or on converting an existing standalone research-quality software tool into a reusable, composable, well-behaved citizen within a larger workflow. In this paper we present 10 simple rules for how a software tool can be prepared for workflow use

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Molecular Insights Into Binding and Activation of the Human KCNQ2 Channel by Retigabine

By |March 16, 2022|Categories: Publications|Tags: , |

Voltage-gated potassium channels of the Kv7.x family are involved in [...]

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Making Canonical Workflow Building Blocks interoperable across workflow languages

By |March 7, 2022|Categories: Publications|Tags: , , , |

We introduce the concept of Canonical Workflow Building Blocks (CWBB), a methodology of describing and wrapping computational tools, in order for them to be utilised in a reproducible manner from multiple workflow languages and execution platforms.

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