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Webinar: PDBe resources to help with starting model selection for molecular dynamics simulations (2024-9-10)

By |2024-08-12T13:41:10+01:00August 12, 2024|Latest News, Webinars|

Date: 10 September 2024 Time: 15:00 CEST Registration [...]

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BioExcel Building Blocks Workflows (BioBB-Wfs), an integrated web-based platform for biomolecular simulations

By |2022-11-03T09:58:03+01:00May 18, 2022|Publications|

We present BioExcel Building Blocks Workflows, a web-based graphical user interface (GUI) of fering access to a collection of transversal pre-configured biomolecular simulation workflows assembled with the BioExcel Building Blocks library.

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BioExcel Building Blocks REST API (BioBB REST API), programmatic access to interoperable biomolecular simulation tools

By |2022-11-03T09:58:03+01:00May 11, 2022|Publications|

BioBB REST API extends and complements the BioBB library offering programmatic access to the collection of biomolecular simulation tools included in the BioExcel Building Blocks library. Molecular Dynamics setup, docking, structure modeling, free energy simulations, and flexibility analyses are examples of functionalities included in the endpoints collection. All functionalities are accessible through standard REST API calls, voiding the need for tool installation.

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Structure- and Interaction-Based Design of Anti-SARS-CoV-2 Aptamers

By |2022-11-03T09:58:05+01:00January 13, 2022|Publications|

Aptamer selection against novel infections is a complicated and time-consuming approach. Synergy can be achieved by using computational methods together with experimental procedures. This study aims to develop a reliable methodology for a rational aptamer in silico et vitro design.

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DeepRank: A deep learning framework for data mining 3D protein-protein interfaces

By |2022-11-03T09:58:05+01:00December 3, 2021|Publications|

Three-dimensional (3D) structures of protein complexes provide fundamental information to [...]

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