All deliverables that are produced by the center as part of the BioExcel CoE funding are provided via the BioExcel community page at Zenodo and listed below.
BioExcel-3 funding stage
Deliverables are published after they are accepted by the funding agency.
BioExcel-2 funding stage
- D1.1 – Specification of software engineering and QA [doi:10.5281/zenodo.6007882]
- D1.2 – Exascale Co-Design Benchmark Cases [doi:10.5281/zenodo.6007799]
- D1.3 – Updated software roadmaps [doi:10.5281/zenodo.6006868]
- D1.4 – Project release of core applications [doi:10.5281/zenodo.4916009]
- D1.5 – Long-term hardware and application roadmap [doi:10.5281/zenodo.5840262]
- D1.6 – Final project release [doi:10.5281/zenodo.7035016]
- D1.7 – Update of whitepaper on scientific software development [doi:10.5281/zenodo.6451631]
- D2.1 – State-of-the-art and Initial Roadmap [doi:10.5281/zenodo.4604607]
- D2.2 – First release of workflow-ready building blocks library [doi:10.5281/zenodo.4605207]
- D2.3 – First release of demonstration workflows [doi:10.5281/zenodo.4540432]
- D2.4 – Development of a framework for the combination of HPC and HPDA operations [doi:10.5281/zenodo.4916029]
- D2.5 – Provision of a Workflow Environment at BioExcel portal [doi:10.5281/zenodo.4916029]
- D2.6 – Integration of BioExcel software framework with standards and international initiatives [doi:10.5281/zenodo.5824544]
- D2.7 – Final release of demonstration workflows [doi:10.5281/zenodo.7034862]
- Published in WorkflowHub
- D3.1 – Use Case Work Plans [doi:10.5281/zenodo.4916093]
- D3.2 – Use Case Data Management Plans [doi:10.5281/zenodo.5511632]
- D3.3 – Use Case Progress Report [doi:10.5281/zenodo.5511684]
- D3.4 – User Community Support and Engagement Report (half-time update) [doi:10.5281/zenodo.6008124]
- D3.5 – Best Practice Guides [doi:10.5281/zenodo.5511704]
- D3.6 – Pre-Exascale showcase calculation and Use Case Final Report [doi:10.5281/zenodo.6451261]
- D3.7 – User Community Support and Engagement Report (final) [doi:10.5281/zenodo.7034963]
- D4.1 – Dissemination and outreach plan [doi:10.5281/zenodo.4604906]
- D4.2 – Training Plan [doi:10.5281/zenodo.4301475]
- D4.3 – Dissemination and training [doi:10.5281/zenodo.5511717]
- D4.4 – Final report on dissemination and training [doi:10.5281/zenodo.6503684]
- D5.1 – Branding and Quality Mark Design Inception Report [doi:10.5281/zenodo.5236160]
- D5.2 – Annotated and Justified Service Catalogue [doi:10.5281/zenodo.5511776]
- D5.3 – Business Model Design Report [doi:10.5281/zenodo.5511791]
- D5.4 – Preliminary Business Plan (confidential)
- D5.5 – Final Business Plan (confidential)
- D5.6 – Branding and Quality Mark Impact Report (confidential)
- D5.7 – Report on state of Business Plan implementation (confidential)
- D6.1 – Management Plan [doi:10.5281/zenodo.6008181]
- D6.2 – Quality Assurance and Risk Management Plan [doi:10.5281/zenodo.5511797]
- D6.3 – High Performance Computing in support of COVID-19 Research [doi:10.5281/zenodo.5840055]
- D6.4 – Report on cumulative expenditure (confidential)
BioExcel-1 funding stage
- D1.1 – Specification of software engineering, testing & QA [doi:10.5281/zenodo.263908]
- D1.2 – First project release of all pilot applications [doi:10.5281/zenodo.5744559]
- D1.3 – Roadmap of future hardware and long-term development plan for each pilot application [doi:10.5281/zenodo.574605]
- D1.4 – Long-term hardware software assessment for pilot applications and general community [doi:10.5281/zenodo.3563747]
- D1.5 – Final project release of pilot applications [doi:10.5281/zenodo.1474181]
- D2.1 – State of the art and gap analysis [doi:10.5281/zenodo.263963]
- D2.2 – First Release of Workflow Blocks and Portals [doi:10.5281/zenodo.263965]
- D2.3 – User Feedback and Future Roadmap [doi:10.5281/zenodo.1060946]
- D2.4 – Final Release of Workflows and Modular Tools for User Services
- D3.1 – Selection and Establishment of User Groups [doi:10.5281/zenodo.264011]
- D3.2 – Consultancy Proposals [doi:10.5281/zenodo.574607]
- D3.3 – Consultancy Modalities and Funding Options, Half-time Update [doi:10.5281/zenodo.574613]
- D3.4 – Efficacy of Feedback Processes [doi:10.5281/zenodo.1060844]
- D3.5 – Consultancy Modalities and Funding Options, Final Update [doi:10.5281/zenodo.3563882]
- D4.1 – Dissemination and Outreach Plan [doi:10.5281/zenodo.264250]
- D4.2 – Competency framework, mapping to current training & initial training plan [doi:10.5281/zenodo.264231]
- D4.3 – Recommendations for BioExcel Training Programme [doi:10.5281/zenodo.263926]
- D4.4 – Dissemination Report and Updated Plan [doi:10.5281/zenodo.574614]
- D4.5 – Training report and updated plan [doi:10.5281/zenodo.574620]
- D4.6 – Final report on dissemination and training [doi:10.5281/zenodo.3564160]
- D5.1 – Initial Business Plan [doi:10.5281/zenodo.263932]
- D5.2 – Revised Business Plan [doi:10.5281/zenodo.574634]
- D5.3 – Updated business plan [doi:10.5281/zenodo.3564172]
- D5.4 – Governance and Business Plan [doi:10.5281/zenodo.3564177]
- D6.1 – Management Plan [doi:10.5281/zenodo.263933]
- D6.2 – Quality Assurance and Risk Management Plan [doi:10.5281/zenodo.263934]
